{
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  "Package": "CTexploreR",
  "Title": "Explores Cancer Testis Genes",
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  "Authors@R": "c(person(given = \"Axelle\",\nfamily = \"Loriot\",\nrole = c(\"aut\", \"cre\"),\nemail = \"axelle.loriot@uclouvain.be\",\ncomment = c(ORCID = \"0000-0002-5288-8561\")),\nperson(given = \"Julie\",\nfamily = \"Devis\",\nrole = \"aut\",\nemail = \"julie.devis@uclouvain.be\",\ncomment = c(ORCID = \"0000-0001-5525-5666\")),\nperson(given = \"Anna\",\nfamily = \"Diacofotaki\",\nrole = \"ctb\",\nemail = \"anna.diacofotaki@uclouvain.be\"),\nperson(given = \"Charles\",\nfamily = \"De Smet\",\nrole = \"ths\",\nemail = \"charles.desmet@uclouvain.be\"),\nperson(given = \"Laurent\",\nfamily = \"Gatto\",\nrole = c(\"aut\",\"ths\"),\nemail = \"laurent.gatto@uclouvain.be\",\ncomment = c(ORCID = \"0000-0002-1520-2268\")))",
  "Description": "The CTexploreR package re-defines the list of Cancer\nTestis/Germline (CT) genes. It is based on publicly available\nRNAseq databases (GTEx, CCLE and TCGA) and summarises CT genes'\nmain characteristics. Several visualisation functions allow to\nexplore their expression in different types of tissues and\ncancer cells, or to inspect the methylation status of their\npromoters in normal tissues.",
  "License": "Artistic-2.0",
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  "biocViews": "Transcriptomics, Epigenetics, DifferentialExpression,\nGeneExpression, DNAMethylation, ExperimentHubSoftware,\nDataImport",
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  "URL": "https://github.com/UCLouvain-CBIO/CTexploreR",
  "BugReports": "https://github.com/UCLouvain-CBIO/CTexploreR/issues",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev perl zlib1g-dev",
  "Repository": "https://uclouvain-cbio.r-universe.dev",
  "Date/Publication": "2025-10-11 17:24:42 UTC",
  "RemoteUrl": "https://github.com/uclouvain-cbio/ctexplorer",
  "RemoteRef": "HEAD",
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  "Packaged": {
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    "User": "root"
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  "Author": "Axelle Loriot [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-5288-8561>),\nJulie Devis [aut] (ORCID: <https://orcid.org/0000-0001-5525-5666>),\nAnna Diacofotaki [ctb],\nCharles De Smet [ths],\nLaurent Gatto [aut, ths] (ORCID:\n<https://orcid.org/0000-0002-1520-2268>)",
  "Maintainer": "Axelle Loriot <axelle.loriot@uclouvain.be>",
  "MD5sum": "3a532d15188da28c1aa435bdbc43012d",
  "_user": "uclouvain-cbio",
  "_type": "src",
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  "_created": "2026-05-09T08:13:55.000Z",
  "_published": "2026-05-22T13:06:55.171Z",
  "_distro": "noble",
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  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/uclouvain-cbio/ctexplorer",
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    "bioconductor"
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    "TCGA_expression",
    "TCGA_methylation_expression_correlation",
    "testis_expression"
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      "page": "all_genes",
      "title": "All genes description table",
      "topics": [
        "all_genes"
      ]
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      "page": "CCLE_expression",
      "title": "Gene expression in CCLE Tumors",
      "topics": [
        "CCLE_expression"
      ]
    },
    {
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      "title": "Gene correlations in CCLE cancer cell lines",
      "topics": [
        "CT_correlated_genes"
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    },
    {
      "page": "CT_genes",
      "title": "CT genes description table",
      "topics": [
        "CT_genes"
      ]
    },
    {
      "page": "DAC_induction",
      "title": "Gene expression in cells treated or not by a demethylating agent",
      "topics": [
        "DAC_induction"
      ]
    },
    {
      "page": "embryo_expression",
      "title": "Gene expression in human embryos",
      "topics": [
        "embryo_expression"
      ]
    },
    {
      "page": "embryos_mean_methylation",
      "title": "Promoter methylation of any gene in early embryos",
      "topics": [
        "embryos_mean_methylation"
      ]
    },
    {
      "page": "fetal_germcells_expression",
      "title": "Gene expression in fetal germ cells",
      "topics": [
        "fetal_germcells_expression"
      ]
    },
    {
      "page": "fetal_germcells_mean_methylation",
      "title": "Promoter methylation of any gene in fetal germ cells",
      "topics": [
        "fetal_germcells_mean_methylation"
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    },
    {
      "page": "GTEX_expression",
      "title": "Gene expression in normal tissues (GTEx)",
      "topics": [
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      ]
    },
    {
      "page": "hESC_expression",
      "title": "Gene expression in human embryonic stem cells",
      "topics": [
        "hESC_expression"
      ]
    },
    {
      "page": "hESC_mean_methylation",
      "title": "Promoter methylation of any gene in hESC",
      "topics": [
        "hESC_mean_methylation"
      ]
    },
    {
      "page": "HPA_cell_type_expression",
      "title": "Gene expression in different human cell types",
      "topics": [
        "HPA_cell_type_expression"
      ]
    },
    {
      "page": "normal_tissue_expression_multimapping",
      "title": "Expression values (TPM) of genes in normal tissues with or without multimapping",
      "topics": [
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      ]
    },
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    },
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      "topics": [
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    },
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      "title": "Gene expression in oocytes",
      "topics": [
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    },
    {
      "page": "set_fontsize",
      "title": "Determine font size",
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      "topics": [
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      "title": "Gene expression in testis cells",
      "topics": [
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      "title": "Cancer Testis explorer",
      "author": "Julie Devis, Laurent Gatto, Axelle Loriot",
      "engine": "knitr::rmarkdown",
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        "Installation",
        "CT genes",
        "CT gene selection",
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        "oocytes_expression()",
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        "fetal_germcells_expression()",
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      "modified": "2024-10-28 10:23:55",
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      "status": "success",
      "buildurl": "https://github.com/r-universe/uclouvain-cbio/actions/runs/25596025009"
    }
  ]
}